PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01013172.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 53aa    MW: 5686.32 Da    PI: 3.5645
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01013172.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.52.6e-07750199240
                   GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvv 240
                            +Ea++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v
  AMDW01013172.1_FGP001   7 EEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFV 50 
                            8******************98877779***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.9E-5750IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
VDPDPDEEAV VVNDVLSLGT LMDESGVFDD PSPRDTVLGS IRDMRPAVFV QAV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-78CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.12e-23PREDICTED: scarecrow-like protein 30
TrEMBLA0A0E0F9B62e-27A0A0E0F9B6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA034760-PA9e-25(Oryza sativa Indica Group)